CRISPRone

CRISPRone report for GCA_003585205.1_ASM358520v1

♦ Seq 1: LSQQ01000021.1 Pseudomonas aeruginosa strain PA_150567 NODE_24_length_81547_cov_14.2398, whole genome shotgun sequence

⇒Summary: seq-len = 81547 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36606-48071 bp Zoom in on locus 1 x25 x23 CRISPR array Location: 36606-38075 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 36606-38075 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09739:cas6f Type: other Location: 38324-38887 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38891-39919 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39930-40913 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40900-42204 bp Gene: COG1203:cas3 Type: Type-I Location: 42262-45492 bp Gene: cd09718:cas1 Type: universal Location: 45489-46463 bp CRISPR array Location: 46724-48071 bp Num of repeats: 23 Spacers: s25-s46 CRISPR array Location: 46724-48071 bp Num of repeats: 23 Spacers: s25-s46 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36606-38075 bp]: array | spacers
           [Locus range 46724-48071 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LSQQ01000010.1 Pseudomonas aeruginosa strain PA_150567 NODE_17_length_159515_cov_19.2464, whole genome shotgun sequence

⇒Summary: seq-len = 159515 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 40315-53405 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 40315-40620 bp Gene: unk Type: unknown Location: 41156-41746 bp Gene: cd09641:cas3HD Type: Type-I Location: 41562-43421 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 53088-53405 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)