CRISPRone

CRISPRone report for GCA_003585225.1_ASM358522v1

♦ Seq 1: LSQT01000006.1 Pseudomonas aeruginosa strain PA_151345 NODE_11_length_180310_cov_39.8102, whole genome shotgun sequence

⇒Summary: seq-len = 180310 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 122031-122539 bp Zoom in on locus 1 x9 CRISPR array Location: 122031-122539 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 122031-122539 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 122031-122539 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LSQT01000013.1 Pseudomonas aeruginosa strain PA_151345 NODE_18_length_109633_cov_32.1823, whole genome shotgun sequence

⇒Summary: seq-len = 109633 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 26096-26364 bp 2 Locus 2: 108492-109360 bp Zoom in on locus 1 x5 Zoom in on locus 2 x15 CRISPR array Location: 26096-26364 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 26096-26364 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 108492-109360 bp Num of repeats: 15 Spacers: s5-s18 CRISPR array Location: 108492-109360 bp Num of repeats: 15 Spacers: s5-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 26096-26364 bp]: array | spacers
           [Locus range 108492-109360 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LSQT01000036.1 Pseudomonas aeruginosa strain PA_151345 NODE_31_length_47764_cov_29.3819, whole genome shotgun sequence

⇒Summary: seq-len = 47764 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37702-47665 bp Zoom in on locus 1 x13 x11 CRISPR array Location: 37702-38450 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 37702-38450 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09739:cas6f Type: other Location: 38633-39196 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39200-40228 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40239-41222 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41209-42513 bp Gene: COG1203:cas3 Type: Type-I Location: 42571-45801 bp Gene: cd09718:cas1 Type: universal Location: 45798-46772 bp CRISPR array Location: 47038-47665 bp Num of repeats: 11 Spacers: s13-s22 CRISPR array Location: 47038-47665 bp Num of repeats: 11 Spacers: s13-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37702-38450 bp]: array | spacers
           [Locus range 47038-47665 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: LSQT01000004.1 Pseudomonas aeruginosa strain PA_151345 NODE_10_length_261290_cov_29.2826, whole genome shotgun sequence

⇒Summary: seq-len = 261290 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 117128-117695 bp Zoom in on locus 1 x10 CRISPR array Location: 117128-117695 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 117128-117695 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 117128-117695 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: LSQT01000015.1 Pseudomonas aeruginosa strain PA_151345 NODE_1_length_850283_cov_31.0486, whole genome shotgun sequence

⇒Summary: seq-len = 850283 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 499487-510978 bp Zoom in on locus 1 x30 x8 CRISPR array Location: 499487-501287 bp Num of repeats: 30 Spacers: s1-s29 CRISPR array Location: 499487-501287 bp Num of repeats: 30 Spacers: s1-s29 Gene: pfam09707:cas2 Type: universal Location: 501352-501651 bp Gene: cd09719:cas1 Type: universal Location: 501648-502538 bp Gene: pfam08798:cas6e Type: other Location: 502565-503176 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 503151-503813 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 503816-504958 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 504968-505498 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 505495-507063 bp Gene: cd09641:cas3HD Type: Type-I Location: 507066-509747 bp CRISPR array Location: 510522-510978 bp Num of repeats: 8 Spacers: s30-s36 CRISPR array Location: 510522-510978 bp Num of repeats: 8 Spacers: s30-s36 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 499487-501287 bp]: array | spacers
           [Locus range 510522-510978 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)