CRISPRone

CRISPRone report for GCA_003585235.1_ASM358523v1

♦ Seq 1: LSQR01000066.1 Pseudomonas aeruginosa strain PA_151970 NODE_9_length_209020_cov_7.66286, whole genome shotgun sequence

⇒Summary: seq-len = 209020 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 354-1583 bp Zoom in on locus 1 x21 CRISPR array Location: 354-1583 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 354-1583 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 354-1583 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LSQR01000029.1 Pseudomonas aeruginosa strain PA_151970 NODE_30_length_46698_cov_7.88886, whole genome shotgun sequence

⇒Summary: seq-len = 46662 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 35039-46310 bp Zoom in on locus 1 x19 x21 CRISPR array Location: 35039-36148 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 35039-36148 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09739:cas6f Type: other Location: 36332-36895 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 36899-37927 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 37938-38921 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 38908-40209 bp Gene: COG1203:cas3 Type: Type-I Location: 40620-43850 bp Gene: cd09718:cas1 Type: universal Location: 43847-44821 bp CRISPR array Location: 45082-46310 bp Num of repeats: 21 Spacers: s19-s38 CRISPR array Location: 45082-46310 bp Num of repeats: 21 Spacers: s19-s38 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 35039-36148 bp]: array | spacers
           [Locus range 45082-46310 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)