CRISPRone

CRISPRone report for GCA_003585245.1_ASM358524v1

♦ Seq 1: LSQC01000026.1 Pseudomonas aeruginosa strain PA_150209 NODE_24_length_69003_cov_20.7188, whole genome shotgun sequence

⇒Summary: seq-len = 69003 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37277-47946 bp Zoom in on locus 1 x15 x21 CRISPR array Location: 37277-38145 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 37277-38145 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 38328-38891 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38895-39923 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39934-40917 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40904-42208 bp Gene: COG1203:cas3 Type: Type-I Location: 42266-45496 bp Gene: cd09718:cas1 Type: universal Location: 45493-46467 bp CRISPR array Location: 46719-47946 bp Num of repeats: 21 Spacers: s15-s34 CRISPR array Location: 46719-47946 bp Num of repeats: 21 Spacers: s15-s34 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37277-38145 bp]: array | spacers
           [Locus range 46719-47946 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LSQC01000018.1 Pseudomonas aeruginosa strain PA_150209 NODE_1_length_535142_cov_26.1272, whole genome shotgun sequence

⇒Summary: seq-len = 535142 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 488576-488904 bp Zoom in on locus 1 x6 CRISPR array Location: 488576-488904 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 488576-488904 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 488576-488904 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)