CRISPRone

CRISPRone report for GCA_003611355.1_ASM361135v1

♦ Seq 1: NRCF01000075.1 Pseudomonas aeruginosa strain Pa795 K21_S49_R1__paired__contig_75, whole genome shotgun sequence

⇒Summary: seq-len = 11065 bp; # of CRISPR array = 6; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-11078 bp Zoom in on locus 1 x3 x14 x4 x4 x2 x5 CRISPR array Location: 0-139 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 0-139 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 288-1096 bp Num of repeats: 14 Spacers: s3-s15 CRISPR array Location: 288-1096 bp Num of repeats: 14 Spacers: s3-s15 CRISPR array Location: 1414-1622 bp Num of repeats: 4 Spacers: s16-s18 CRISPR array Location: 1414-1622 bp Num of repeats: 4 Spacers: s16-s18 CRISPR array Location: 1794-2002 bp Num of repeats: 4 Spacers: s19-s21 CRISPR array Location: 1794-2002 bp Num of repeats: 4 Spacers: s19-s21 CRISPR array Location: 2139-2227 bp Num of repeats: 2 Spacers: s22-s22 CRISPR array Location: 2139-2227 bp Num of repeats: 2 Spacers: s22-s22 Gene: cd09718:cas1 Type: universal Location: 2488-3462 bp Gene: COG1203:cas3 Type: Type-I Location: 3459-6689 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6747-8051 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 8038-9021 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 9032-10060 bp Gene: cd09739:cas6f Type: other Location: 10064-10627 bp CRISPR array Location: 10811-11078 bp Num of repeats: 5 Spacers: s23-s26 CRISPR array Location: 10811-11078 bp Num of repeats: 5 Spacers: s23-s26 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 0-139 bp]: array | spacers
           [Locus range 288-1096 bp]: array | spacers
           [Locus range 1414-1622 bp]: array | spacers
           [Locus range 1794-2002 bp]: array | spacers
           [Locus range 2139-2227 bp]: array | spacers
           [Locus range 10811-11078 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NRCF01000038.1 Pseudomonas aeruginosa strain Pa795 K21_S49_R1__paired__contig_38, whole genome shotgun sequence

⇒Summary: seq-len = 36922 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36725-36933 bp Zoom in on locus 1 x4 CRISPR array Location: 36725-36933 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 36725-36933 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 36725-36933 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NRCF01000019.1 Pseudomonas aeruginosa strain Pa795 K21_S49_R1__paired__contig_19, whole genome shotgun sequence

⇒Summary: seq-len = 116314 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15377-25238 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 15377-17743 bp Gene: unk Type: unknown Location: 18136-18783 bp Gene: unk Type: unknown Location: 18849-19136 bp Gene: pfam13280:WYL Type: other Location: 19267-20142 bp Gene: unk Type: unknown Location: 20157-20690 bp Gene: unk Type: unknown Location: 21000-21179 bp Gene: pfam13280:WYL Type: other Location: 22451-23467 bp Gene: mkCas0115:csx3 Type: other Location: 23628-25238 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)