CRISPRone

CRISPRone report for GCA_003611395.1_ASM361139v1

♦ Seq 1: NRCC01000064.1 Pseudomonas aeruginosa strain Pa2441 K9_S46_R1__paired__contig_64, whole genome shotgun sequence

⇒Summary: seq-len = 33289 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32124-33269 bp Zoom in on locus 1 x11 x7 CRISPR array Location: 32124-32753 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 32124-32753 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 32881-33269 bp Num of repeats: 7 Spacers: s11-s16 CRISPR array Location: 32881-33269 bp Num of repeats: 7 Spacers: s11-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 32124-32753 bp]: array | spacers
           [Locus range 32881-33269 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: NRCC01000024.1 Pseudomonas aeruginosa strain Pa2441 K9_S46_R1__paired__contig_24, whole genome shotgun sequence

⇒Summary: seq-len = 116280 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91046-100907 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 91046-92656 bp Gene: pfam13280:WYL Type: other Location: 92817-93833 bp Gene: unk Type: unknown Location: 95105-95284 bp Gene: unk Type: unknown Location: 95594-96127 bp Gene: pfam13280:WYL Type: other Location: 96142-97017 bp Gene: unk Type: unknown Location: 97148-97435 bp Gene: unk Type: unknown Location: 97570-98148 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 98541-100907 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: NRCC01000004.1 Pseudomonas aeruginosa strain Pa2441 K9_S46_R1__paired__contig_4, whole genome shotgun sequence

⇒Summary: seq-len = 65788 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4-10756 bp Zoom in on locus 1 x12 x20 CRISPR array Location: 4-693 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 4-693 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09718:cas1 Type: universal Location: 1266-2240 bp Gene: COG1203:cas3 Type: Type-I Location: 2237-5467 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5525-6829 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6816-7799 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7810-8838 bp Gene: cd09739:cas6f Type: other Location: 8842-9405 bp CRISPR array Location: 9589-10756 bp Num of repeats: 20 Spacers: s12-s30 CRISPR array Location: 9589-10756 bp Num of repeats: 20 Spacers: s12-s30 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 4-693 bp]: array | spacers
           [Locus range 9589-10756 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)