CRISPRone

CRISPRone report for GCA_003625425.1_ASM362542v1

♦ Seq 1: PNES01000025.1 Clostridioides difficile strain CD6 NODE_25_length_70757_cov_18.4272, whole genome shotgun sequence

⇒Summary: seq-len = 70757 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 23428-23717 bp]: array | spacers
           [Locus range 25582-25938 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: PNES01000039.1 Clostridioides difficile strain CD6 NODE_39_length_30817_cov_15.7304, whole genome shotgun sequence

⇒Summary: seq-len = 30817 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 6094-6388 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: PNES01000063.1 Clostridioides difficile strain CD6 NODE_63_length_8475_cov_10.7647, whole genome shotgun sequence

⇒Summary: seq-len = 8475 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 844-1802 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: PNES01000070.1 Clostridioides difficile strain CD6 NODE_70_length_4645_cov_12.726, whole genome shotgun sequence

⇒Summary: seq-len = 4645 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 310-1133 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: PNES01000008.1 Clostridioides difficile strain CD6 NODE_8_length_123802_cov_18.3868, whole genome shotgun sequence

⇒Summary: seq-len = 123802 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 26594-28212 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: PNES01000001.1 Clostridioides difficile strain CD6 NODE_1_length_240890_cov_17.2402, whole genome shotgun sequence

⇒Summary: seq-len = 240890 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 61988-62674 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: PNES01000003.1 Clostridioides difficile strain CD6 NODE_3_length_205134_cov_18.507, whole genome shotgun sequence

⇒Summary: seq-len = 205134 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 70016-70638 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: PNES01000004.1 Clostridioides difficile strain CD6 NODE_4_length_201900_cov_16.2692, whole genome shotgun sequence

⇒Summary: seq-len = 201900 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 2781-3406 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: PNES01000036.1 Clostridioides difficile strain CD6 NODE_36_length_38374_cov_13.3258, whole genome shotgun sequence

⇒Summary: seq-len = 38374 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 2016-2110 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: PNES01000009.1 Clostridioides difficile strain CD6 NODE_9_length_122191_cov_18.2551, whole genome shotgun sequence

⇒Summary: seq-len = 122191 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)