CRISPRone

CRISPRone report for GCA_003625435.1_ASM362543v1

♦ Seq 1: PNET01000005.1 Clostridioides difficile strain 14042403 NODE_5_length_236485_cov_53.1743, whole genome shotgun sequence

⇒Summary: seq-len = 236485 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: PNET01000002.1 Clostridioides difficile strain 14042403 NODE_2_length_354017_cov_50.913, whole genome shotgun sequence

⇒Summary: seq-len = 354017 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 299436-300129 bp]: array | spacers
           [Locus range 341749-341844 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: PNET01000003.1 Clostridioides difficile strain 14042403 NODE_3_length_310424_cov_51.523, whole genome shotgun sequence

⇒Summary: seq-len = 310424 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 112573-113724 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: PNET01000008.1 Clostridioides difficile strain 14042403 NODE_8_length_149701_cov_52.9949, whole genome shotgun sequence

⇒Summary: seq-len = 149701 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 23687-23976 bp]: array | spacers
           [Locus range 25841-26197 bp]: array | spacers
           [Locus range 118581-118874 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: PNET01000007.1 Clostridioides difficile strain 14042403 NODE_7_length_155060_cov_54.9462, whole genome shotgun sequence

⇒Summary: seq-len = 155060 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 26256-27741 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: PNET01000001.1 Clostridioides difficile strain 14042403 NODE_1_length_410066_cov_56.3116, whole genome shotgun sequence

⇒Summary: seq-len = 410066 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 70043-70665 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: PNET01000004.1 Clostridioides difficile strain 14042403 NODE_4_length_289960_cov_53.1056, whole genome shotgun sequence

⇒Summary: seq-len = 289960 bp; # of CRISPR array = 2; # of cas gene = 3  (type III) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 79024-79710 bp]: array | spacers
           [Locus range 288099-289116 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)