CRISPRone

CRISPRone report for GCA_003628855.1_ASM362885v1

♦ Seq 1: RAGA01000199.1 Pseudomonas aeruginosa strain HUM-313-D2 PA2_B6_NODE_266_length_3952_cov_35.1925_ID_531, whole genome shotgun sequence

⇒Summary: seq-len = 3952 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1916-3084 bp Zoom in on locus 1 x20 CRISPR array Location: 1916-3084 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 1916-3084 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1916-3084 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RAGA01000029.1 Pseudomonas aeruginosa strain HUM-313-D2 PA2_B6_NODE_70_length_29434_cov_26.8874_ID_139, whole genome shotgun sequence

⇒Summary: seq-len = 29434 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-10100 bp Zoom in on locus 1 x39 Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1-987 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 998-1981 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 1968-3272 bp Gene: COG1203:cas3 Type: Type-I Location: 3330-6560 bp Gene: cd09718:cas1 Type: universal Location: 6557-7531 bp CRISPR array Location: 7793-10100 bp Num of repeats: 39 Spacers: s1-s38 CRISPR array Location: 7793-10100 bp Num of repeats: 39 Spacers: s1-s38 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7793-10100 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)