CRISPRone

CRISPRone report for GCA_003628875.1_ASM362887v1

♦ Seq 1: RAFY01000264.1 Pseudomonas aeruginosa strain HUM-291 NODE_16_length_105951_cov_13.0731_ID_31, whole genome shotgun sequence

⇒Summary: seq-len = 105951 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21869-31324 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 21869-22945 bp Gene: pfam13280:WYL Type: other Location: 25309-26184 bp Gene: unk Type: unknown Location: 26314-27894 bp Gene: unk Type: unknown Location: 27918-28565 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 28958-31324 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RAFY01000624.1 Pseudomonas aeruginosa strain HUM-291 NODE_46_length_47562_cov_10.5223_ID_91, whole genome shotgun sequence

⇒Summary: seq-len = 47562 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36365-46564 bp Zoom in on locus 1 x12 x16 CRISPR array Location: 36365-37053 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 36365-37053 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09739:cas6f Type: other Location: 37236-37799 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 37803-38831 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 38842-39825 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 39812-41116 bp Gene: COG1203:cas3 Type: Type-I Location: 41174-44404 bp Gene: cd09718:cas1 Type: universal Location: 44401-45375 bp CRISPR array Location: 45637-46564 bp Num of repeats: 16 Spacers: s12-s26 CRISPR array Location: 45637-46564 bp Num of repeats: 16 Spacers: s12-s26 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36365-37053 bp]: array | spacers
           [Locus range 45637-46564 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)