CRISPRone

CRISPRone report for GCA_003628905.1_ASM362890v1

♦ Seq 1: RAFX01000136.1 Pseudomonas aeruginosa strain HUM-339 NODE_16_length_134008_cov_47.6265_ID_31, whole genome shotgun sequence

⇒Summary: seq-len = 134008 bp; # of CRISPR array = 0; # of cas gene = 5  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 85906-91378 bp Zoom in on locus 1 Gene: cd09707:csf3gr5 Type: Subtype-IV-A Location: 85906-86556 bp Gene: cd09706:csf2gr7 Type: Subtype-IV-A Location: 86563-87606 bp Gene: cd09705:csf1gr8 Type: Subtype-IV-A Location: 87606-88361 bp Gene: mkCas0159:csf5gr6 Type: Subtype-IV-A Location: 88390-89115 bp Gene: cd09708:DinG Type: Subtype-IV-A Location: 89204-91378 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RAFX01000041.1 Pseudomonas aeruginosa strain HUM-339 NODE_28_length_80318_cov_21.9392_ID_55, whole genome shotgun sequence

⇒Summary: seq-len = 80318 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36523-47382 bp Zoom in on locus 1 x13 x26 CRISPR array Location: 36523-37271 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 36523-37271 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09739:cas6f Type: other Location: 37454-38017 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38021-39049 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39060-40043 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40030-41334 bp Gene: COG1203:cas3 Type: Type-I Location: 41392-44622 bp Gene: cd09718:cas1 Type: universal Location: 44619-45593 bp CRISPR array Location: 45855-47382 bp Num of repeats: 26 Spacers: s13-s37 CRISPR array Location: 45855-47382 bp Num of repeats: 26 Spacers: s13-s37 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36523-37271 bp]: array | spacers
           [Locus range 45855-47382 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)