CRISPRone

CRISPRone report for GCA_003628975.1_ASM362897v1

♦ Seq 1: RAFT01000174.1 Pseudomonas aeruginosa strain VET-54 PA2_A4_NODE_141_length_12312_cov_28.786_ID_281, whole genome shotgun sequence

⇒Summary: seq-len = 12312 bp; # of CRISPR array = 0; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6714-12311 bp Zoom in on locus 1 Gene: pfam08798:cas6e Type: other Location: 6714-7253 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 7300-7962 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 7964-9106 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 9116-9646 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 9643-11211 bp Gene: COG1203:cas3 Type: Type-I Location: 11214-12311 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RAFT01000098.1 Pseudomonas aeruginosa strain VET-54 PA2_A4_NODE_181_length_8181_cov_32.6188_ID_361, whole genome shotgun sequence

⇒Summary: seq-len = 8181 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2434-3134 bp Zoom in on locus 1 x2 x9 CRISPR array Location: 2434-2523 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 2434-2523 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 2618-3134 bp Num of repeats: 9 Spacers: s2-s9 CRISPR array Location: 2618-3134 bp Num of repeats: 9 Spacers: s2-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2434-2523 bp]: array | spacers
           [Locus range 2618-3134 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)