CRISPRone

CRISPRone report for GCA_003629005.1_ASM362900v1

♦ Seq 1: RAFS01000035.1 Pseudomonas aeruginosa strain HUM-303 PA3_A9_NODE_30_length_86420_cov_52.1454_ID_59, whole genome shotgun sequence

⇒Summary: seq-len = 86420 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 83-831 bp Zoom in on locus 1 x13 CRISPR array Location: 83-831 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 83-831 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 83-831 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RAFS01000037.1 Pseudomonas aeruginosa strain HUM-303 PA3_A9_NODE_2_length_439929_cov_44.9468_ID_3, whole genome shotgun sequence

⇒Summary: seq-len = 439929 bp; # of CRISPR array = 3; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2635-13146 bp Zoom in on locus 1 x12 x2 x7 CRISPR array Location: 2635-3335 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 2635-3335 bp Num of repeats: 12 Spacers: s1-s11 Gene: pfam09707:cas2 Type: universal Location: 3400-3699 bp Gene: cd09719:cas1 Type: universal Location: 3696-4586 bp Gene: pfam08798:cas6e Type: other Location: 4613-5152 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 5199-5861 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 5863-7005 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 7015-7545 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 7542-9110 bp Gene: cd09641:cas3HD Type: Type-I Location: 9113-11794 bp CRISPR array Location: 12568-12657 bp Num of repeats: 2 Spacers: s12-s12 CRISPR array Location: 12568-12657 bp Num of repeats: 2 Spacers: s12-s12 CRISPR array Location: 12752-13146 bp Num of repeats: 7 Spacers: s13-s18 CRISPR array Location: 12752-13146 bp Num of repeats: 7 Spacers: s13-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2635-3335 bp]: array | spacers
           [Locus range 12568-12657 bp]: array | spacers
           [Locus range 12752-13146 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RAFS01000021.1 Pseudomonas aeruginosa strain HUM-303 PA3_A9_NODE_41_length_47765_cov_45.1883_ID_81, whole genome shotgun sequence

⇒Summary: seq-len = 47765 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38088-47683 bp Zoom in on locus 1 x15 x3 CRISPR array Location: 38088-38956 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 38088-38956 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 39139-39702 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39706-40734 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40745-41728 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41715-43019 bp Gene: COG1203:cas3 Type: Type-I Location: 43077-46307 bp Gene: cd09718:cas1 Type: universal Location: 46304-47278 bp CRISPR array Location: 47536-47683 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 47536-47683 bp Num of repeats: 3 Spacers: s15-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38088-38956 bp]: array | spacers
           [Locus range 47536-47683 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)