CRISPRone

CRISPRone report for GCA_003629035.1_ASM362903v1

♦ Seq 1: RAFR01000234.1 Pseudomonas aeruginosa strain VET-71 PA2_H8_NODE_6_length_74133_cov_18.1056_ID_11, whole genome shotgun sequence

⇒Summary: seq-len = 74133 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10665-14458 bp Zoom in on locus 1 Gene: pfam09002:csx1 Type: Type-III Location: 10665-11141 bp Gene: pfam13280:WYL Type: other Location: 11473-12378 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 12380-14458 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RAFR01000054.1 Pseudomonas aeruginosa strain VET-71 PA2_H8_NODE_137_length_12908_cov_21.6281_ID_273, whole genome shotgun sequence

⇒Summary: seq-len = 12908 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12079-12826 bp Zoom in on locus 1 x13 CRISPR array Location: 12079-12826 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 12079-12826 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12079-12826 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RAFR01000233.1 Pseudomonas aeruginosa strain VET-71 PA2_H8_NODE_29_length_44102_cov_18.748_ID_57, whole genome shotgun sequence

⇒Summary: seq-len = 44102 bp; # of CRISPR array = 3; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2267-12779 bp Zoom in on locus 1 x7 x2 x12 CRISPR array Location: 2267-2662 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 2267-2662 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 2756-2846 bp Num of repeats: 2 Spacers: s7-s7 CRISPR array Location: 2756-2846 bp Num of repeats: 2 Spacers: s7-s7 Gene: cd09641:cas3HD Type: Type-I Location: 3619-6300 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 6303-7871 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 7868-8398 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 8408-9550 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 9552-10214 bp Gene: pfam08798:cas6e Type: other Location: 10261-10800 bp Gene: cd09719:cas1 Type: universal Location: 10827-11717 bp Gene: pfam09707:cas2 Type: universal Location: 11714-12013 bp CRISPR array Location: 12078-12779 bp Num of repeats: 12 Spacers: s8-s18 CRISPR array Location: 12078-12779 bp Num of repeats: 12 Spacers: s8-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2267-2662 bp]: array | spacers
           [Locus range 2756-2846 bp]: array | spacers
           [Locus range 12078-12779 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RAFR01000582.1 Pseudomonas aeruginosa strain VET-71 PA2_H8_NODE_12_length_60391_cov_19.796_ID_23, whole genome shotgun sequence

⇒Summary: seq-len = 60391 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38680-48154 bp Zoom in on locus 1 x13 x3 CRISPR array Location: 38680-39427 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 38680-39427 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09739:cas6f Type: other Location: 39610-40173 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40177-41205 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41216-42199 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42186-43490 bp Gene: COG1203:cas3 Type: Type-I Location: 43548-46778 bp Gene: cd09718:cas1 Type: universal Location: 46775-47749 bp CRISPR array Location: 48007-48154 bp Num of repeats: 3 Spacers: s13-s14 CRISPR array Location: 48007-48154 bp Num of repeats: 3 Spacers: s13-s14 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38680-39427 bp]: array | spacers
           [Locus range 48007-48154 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)