CRISPRone

CRISPRone report for GCA_003629045.1_ASM362904v1

♦ Seq 1: RAFQ01000006.1 Pseudomonas aeruginosa strain VET-23 NODE_44_length_47932_cov_19.9466_ID_87, whole genome shotgun sequence

⇒Summary: seq-len = 47932 bp; # of CRISPR array = 3; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38050-47872 bp Zoom in on locus 1 x15 x2 x4 CRISPR array Location: 38050-38918 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 38050-38918 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 39101-39664 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39668-40696 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40707-41690 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41677-42981 bp Gene: COG1203:cas3 Type: Type-I Location: 43039-46269 bp Gene: cd09718:cas1 Type: universal Location: 46266-47240 bp CRISPR array Location: 47505-47592 bp Num of repeats: 2 Spacers: s15-s15 CRISPR array Location: 47505-47592 bp Num of repeats: 2 Spacers: s15-s15 CRISPR array Location: 47665-47872 bp Num of repeats: 4 Spacers: s16-s18 CRISPR array Location: 47665-47872 bp Num of repeats: 4 Spacers: s16-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38050-38918 bp]: array | spacers
           [Locus range 47505-47592 bp]: array | spacers
           [Locus range 47665-47872 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RAFQ01000051.1 Pseudomonas aeruginosa strain VET-23 NODE_30_length_63448_cov_19.8336_ID_59, whole genome shotgun sequence

⇒Summary: seq-len = 63448 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61-629 bp Zoom in on locus 1 x10 CRISPR array Location: 61-629 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 61-629 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 61-629 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)