CRISPRone

CRISPRone report for GCA_003629055.1_ASM362905v1

♦ Seq 1: RAFP01000173.1 Pseudomonas aeruginosa strain VET-74 PA2_C9_NODE_394_length_3309_cov_33.2265_ID_787, whole genome shotgun sequence

⇒Summary: seq-len = 3309 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2993-3322 bp Zoom in on locus 1 x6 CRISPR array Location: 2993-3322 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 2993-3322 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2993-3322 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RAFP01000160.1 Pseudomonas aeruginosa strain VET-74 PA2_C9_NODE_60_length_24299_cov_31.9641_ID_119, whole genome shotgun sequence

⇒Summary: seq-len = 24299 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23050-24217 bp Zoom in on locus 1 x20 CRISPR array Location: 23050-24217 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 23050-24217 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23050-24217 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RAFP01000168.1 Pseudomonas aeruginosa strain VET-74 PA2_C9_NODE_92_length_19725_cov_40.5246_ID_183, whole genome shotgun sequence

⇒Summary: seq-len = 19725 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11516-19724 bp Zoom in on locus 1 x7 Gene: cd09641:cas3HD Type: Type-I Location: 11516-13750 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 13801-14475 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 14472-16235 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 16247-17116 bp Gene: pfam01930:cas4 Type: Type-I Location: 17135-17767 bp Gene: cd09721:cas1 Type: universal Location: 17771-18811 bp Gene: cd09725:cas2 Type: universal Location: 18821-19111 bp CRISPR array Location: 19293-19724 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 19293-19724 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19293-19724 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RAFP01000498.1 Pseudomonas aeruginosa strain VET-74 PA2_C9_NODE_540_length_1056_cov_42.7222_ID_1079, whole genome shotgun sequence

⇒Summary: seq-len = 1056 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-1013 bp Zoom in on locus 1 x16 CRISPR array Location: 0-1013 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 0-1013 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-1013 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: RAFP01000353.1 Pseudomonas aeruginosa strain VET-74 PA2_C9_NODE_224_length_9186_cov_29.7642_ID_447, whole genome shotgun sequence

⇒Summary: seq-len = 9186 bp; # of CRISPR array = 3; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-9104 bp Zoom in on locus 1 x4 x2 x3 CRISPR array Location: 2-210 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 2-210 bp Num of repeats: 4 Spacers: s1-s3 Gene: cd09739:cas6f Type: other Location: 393-956 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 960-1988 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 1999-2982 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 2969-4273 bp Gene: COG1203:cas3 Type: Type-I Location: 4331-7561 bp Gene: cd09718:cas1 Type: universal Location: 7558-8532 bp CRISPR array Location: 8797-8884 bp Num of repeats: 2 Spacers: s4-s4 CRISPR array Location: 8797-8884 bp Num of repeats: 2 Spacers: s4-s4 CRISPR array Location: 8957-9104 bp Num of repeats: 3 Spacers: s5-s6 CRISPR array Location: 8957-9104 bp Num of repeats: 3 Spacers: s5-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2-210 bp]: array | spacers
           [Locus range 8797-8884 bp]: array | spacers
           [Locus range 8957-9104 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: RAFP01000118.1 Pseudomonas aeruginosa strain VET-74 PA2_C9_NODE_110_length_18082_cov_37.3618_ID_219, whole genome shotgun sequence

⇒Summary: seq-len = 18082 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 60-159 bp Zoom in on locus 1 x2 CRISPR array Location: 60-159 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 60-159 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 60-159 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)