CRISPRone

CRISPRone report for GCA_003629145.1_ASM362914v1

♦ Seq 1: RAFL01000067.1 Pseudomonas aeruginosa strain HUM-325 NODE_45_length_49123_cov_16.6335_ID_89, whole genome shotgun sequence

⇒Summary: seq-len = 49123 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38036-49014 bp Zoom in on locus 1 x20 x21 CRISPR array Location: 38036-39201 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 38036-39201 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09739:cas6f Type: other Location: 39385-39948 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39952-40980 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40991-41974 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41961-43265 bp Gene: COG1203:cas3 Type: Type-I Location: 43323-46553 bp Gene: cd09718:cas1 Type: universal Location: 46550-47524 bp CRISPR array Location: 47786-49014 bp Num of repeats: 21 Spacers: s20-s39 CRISPR array Location: 47786-49014 bp Num of repeats: 21 Spacers: s20-s39 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38036-39201 bp]: array | spacers
           [Locus range 47786-49014 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RAFL01000060.1 Pseudomonas aeruginosa strain HUM-325 NODE_12_length_158367_cov_22.2475_ID_23, whole genome shotgun sequence

⇒Summary: seq-len = 158367 bp; # of CRISPR array = 0; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80322-93065 bp 2 Locus 2: 111653-124743 bp Zoom in on locus 1 Zoom in on locus 2 Gene: COG0640:csa3 Type: Subtype-I-A Location: 80322-81239 bp Gene: unk Type: unknown Location: 81390-82439 bp Gene: mkCas0071:csa5gr11 Type: Subtype-I-A Location: 82482-84467 bp Gene: unk Type: unknown Location: 84592-85056 bp Gene: unk Type: unknown Location: 91530-92441 bp Gene: cd06127:DEDDh Type: Type-I Location: 92520-93065 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 111653-111955 bp Gene: cd09641:cas3HD Type: Type-I Location: 121637-123496 bp Gene: unk Type: unknown Location: 123312-123902 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 124438-124743 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RAFL01000078.1 Pseudomonas aeruginosa strain HUM-325 NODE_62_length_22916_cov_18.5743_ID_123, whole genome shotgun sequence

⇒Summary: seq-len = 22916 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110-498 bp Zoom in on locus 1 x7 CRISPR array Location: 110-498 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 110-498 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110-498 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)