CRISPRone

CRISPRone report for GCA_003629165.1_ASM362916v1

♦ Seq 1: RAFK01000009.1 Pseudomonas aeruginosa strain HUM-289 PA3_F7_NODE_33_length_49235_cov_37.7731_ID_65, whole genome shotgun sequence

⇒Summary: seq-len = 49235 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38186-49104 bp Zoom in on locus 1 x20 x20 CRISPR array Location: 38186-39351 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 38186-39351 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09739:cas6f Type: other Location: 39535-40098 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40102-41130 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41141-42124 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42111-43415 bp Gene: COG1203:cas3 Type: Type-I Location: 43473-46703 bp Gene: cd09718:cas1 Type: universal Location: 46700-47674 bp CRISPR array Location: 47936-49104 bp Num of repeats: 20 Spacers: s20-s38 CRISPR array Location: 47936-49104 bp Num of repeats: 20 Spacers: s20-s38 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38186-39351 bp]: array | spacers
           [Locus range 47936-49104 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RAFK01000052.1 Pseudomonas aeruginosa strain HUM-289 PA3_F7_NODE_3_length_424708_cov_51.2071_ID_5, whole genome shotgun sequence

⇒Summary: seq-len = 424708 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 424130-424577 bp Zoom in on locus 1 x8 CRISPR array Location: 424130-424577 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 424130-424577 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 424130-424577 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RAFK01000030.1 Pseudomonas aeruginosa strain HUM-289 PA3_F7_NODE_22_length_110284_cov_48.7192_ID_43, whole genome shotgun sequence

⇒Summary: seq-len = 110284 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33660-46750 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 33660-33965 bp Gene: unk Type: unknown Location: 34501-34734 bp Gene: cd09641:cas3HD Type: Type-I Location: 34907-36766 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 46448-46750 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)