CRISPRone

CRISPRone report for GCA_003629185.1_ASM362918v1

♦ Seq 1: RAFJ01000087.1 Pseudomonas aeruginosa strain HUM-235 PA3_A2_NODE_20_length_117690_cov_29.433_ID_39, whole genome shotgun sequence

⇒Summary: seq-len = 117690 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80344-93087 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 80344-81261 bp Gene: unk Type: unknown Location: 81412-82461 bp Gene: mkCas0071:csa5gr11 Type: Subtype-I-A Location: 82504-84489 bp Gene: unk Type: unknown Location: 84614-85078 bp Gene: unk Type: unknown Location: 91552-92463 bp Gene: cd06127:DEDDh Type: Type-I Location: 92542-93087 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RAFJ01000100.1 Pseudomonas aeruginosa strain HUM-235 PA3_A2_NODE_68_length_23473_cov_46.2884_ID_135, whole genome shotgun sequence

⇒Summary: seq-len = 23473 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12082-13833 bp Zoom in on locus 1 Gene: cd06127:DEDDh Type: Type-I Location: 12082-12687 bp Gene: mkCas0131:cas8b5 Type: Subtype-I-B Location: 12817-13833 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RAFJ01000061.1 Pseudomonas aeruginosa strain HUM-235 PA3_A2_NODE_13_length_139377_cov_30.7941_ID_25, whole genome shotgun sequence

⇒Summary: seq-len = 139377 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 127490-127877 bp Zoom in on locus 1 x7 CRISPR array Location: 127490-127877 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 127490-127877 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 127490-127877 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)