CRISPRone

CRISPRone report for GCA_003629195.1_ASM362919v1

♦ Seq 1: RAFI01000109.1 Pseudomonas aeruginosa strain HUM-286 PA3_C7_NODE_40_length_49235_cov_45.3122_ID_79, whole genome shotgun sequence

⇒Summary: seq-len = 49235 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38186-49104 bp Zoom in on locus 1 x20 x20 CRISPR array Location: 38186-39351 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 38186-39351 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09739:cas6f Type: other Location: 39535-40098 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40102-41130 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41141-42124 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42111-43415 bp Gene: COG1203:cas3 Type: Type-I Location: 43473-46703 bp Gene: cd09718:cas1 Type: universal Location: 46700-47674 bp CRISPR array Location: 47936-49104 bp Num of repeats: 20 Spacers: s20-s38 CRISPR array Location: 47936-49104 bp Num of repeats: 20 Spacers: s20-s38 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38186-39351 bp]: array | spacers
           [Locus range 47936-49104 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RAFI01000093.1 Pseudomonas aeruginosa strain HUM-286 PA3_C7_NODE_2_length_424648_cov_51.7267_ID_3, whole genome shotgun sequence

⇒Summary: seq-len = 424648 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 424130-424517 bp Zoom in on locus 1 x7 CRISPR array Location: 424130-424517 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 424130-424517 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 424130-424517 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)