CRISPRone

CRISPRone report for GCA_003629235.1_ASM362923v1

♦ Seq 1: RAFH01000046.1 Pseudomonas aeruginosa strain HUM-333 NODE_36_length_49063_cov_16.974_ID_71, whole genome shotgun sequence

⇒Summary: seq-len = 49063 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38036-48954 bp Zoom in on locus 1 x20 x20 CRISPR array Location: 38036-39201 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 38036-39201 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09739:cas6f Type: other Location: 39385-39948 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39952-40980 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40991-41974 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41961-43265 bp Gene: COG1203:cas3 Type: Type-I Location: 43323-46553 bp Gene: cd09718:cas1 Type: universal Location: 46550-47524 bp CRISPR array Location: 47786-48954 bp Num of repeats: 20 Spacers: s20-s38 CRISPR array Location: 47786-48954 bp Num of repeats: 20 Spacers: s20-s38 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38036-39201 bp]: array | spacers
           [Locus range 47786-48954 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RAFH01000093.1 Pseudomonas aeruginosa strain HUM-333 NODE_2_length_424604_cov_18.8902_ID_3, whole genome shotgun sequence

⇒Summary: seq-len = 424604 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110-498 bp Zoom in on locus 1 x7 CRISPR array Location: 110-498 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 110-498 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110-498 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)