CRISPRone

CRISPRone report for GCA_003629245.1_ASM362924v1

♦ Seq 1: RAFG01000019.1 Pseudomonas aeruginosa strain HUM-327-D1 repl2 PA3_D11_NODE_21_length_99872_cov_28.3406_ID_41, whole genome shotgun sequence

⇒Summary: seq-len = 99872 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53266-66356 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 53266-53568 bp Gene: cd09641:cas3HD Type: Type-I Location: 63250-65109 bp Gene: unk Type: unknown Location: 65282-65515 bp Gene: unk Type: unknown Location: 65630-66004 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 66051-66356 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RAFG01000004.1 Pseudomonas aeruginosa strain HUM-327-D1 repl2 PA3_D11_NODE_42_length_49533_cov_21.3901_ID_83, whole genome shotgun sequence

⇒Summary: seq-len = 49533 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38544-49402 bp Zoom in on locus 1 x20 x19 CRISPR array Location: 38544-39709 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 38544-39709 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09739:cas6f Type: other Location: 39893-40456 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40460-41488 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41499-42482 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42469-43773 bp Gene: COG1203:cas3 Type: Type-I Location: 43831-47061 bp Gene: cd09718:cas1 Type: universal Location: 47058-48032 bp CRISPR array Location: 48294-49402 bp Num of repeats: 19 Spacers: s20-s37 CRISPR array Location: 48294-49402 bp Num of repeats: 19 Spacers: s20-s37 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38544-39709 bp]: array | spacers
           [Locus range 48294-49402 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RAFG01000072.1 Pseudomonas aeruginosa strain HUM-327-D1 repl2 PA3_D11_NODE_55_length_38750_cov_26.1361_ID_109, whole genome shotgun sequence

⇒Summary: seq-len = 38750 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38232-38619 bp Zoom in on locus 1 x7 CRISPR array Location: 38232-38619 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 38232-38619 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38232-38619 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)