CRISPRone

CRISPRone report for GCA_003629275.1_ASM362927v1

♦ Seq 1: RAFF01000405.1 Pseudomonas aeruginosa strain HUM-327-D1 repl1 PA2_F12_NODE_147_length_16306_cov_6.51013_ID_297, whole genome shotgun sequence

⇒Summary: seq-len = 16306 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10549-16303 bp Zoom in on locus 1 x20 CRISPR array Location: 10549-11714 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 10549-11714 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09739:cas6f Type: other Location: 11898-12461 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 12465-13493 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 13504-14487 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 14474-15778 bp Gene: cd09673:cas3f Type: Subtype-I-F Location: 15836-16303 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 10549-11714 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RAFF01000004.1 Pseudomonas aeruginosa strain HUM-327-D1 repl1 PA2_F12_NODE_407_length_1375_cov_11.8251_ID_813, whole genome shotgun sequence

⇒Summary: seq-len = 1375 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 136-1244 bp Zoom in on locus 1 x19 CRISPR array Location: 136-1244 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 136-1244 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 136-1244 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RAFF01000307.1 Pseudomonas aeruginosa strain HUM-327-D1 repl1 PA2_F12_NODE_3_length_82724_cov_7.37375_ID_5, whole genome shotgun sequence

⇒Summary: seq-len = 82724 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63750-76840 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 63750-64052 bp Gene: cd09641:cas3HD Type: Type-I Location: 73734-75593 bp Gene: unk Type: unknown Location: 75766-75999 bp Gene: unk Type: unknown Location: 76114-76488 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 76535-76840 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RAFF01000335.1 Pseudomonas aeruginosa strain HUM-327-D1 repl1 PA2_F12_NODE_345_length_3879_cov_6.41869_ID_689, whole genome shotgun sequence

⇒Summary: seq-len = 3879 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-3740 bp Zoom in on locus 1 Gene: COG1203:cas3 Type: Type-I Location: 1-2769 bp Gene: cd09718:cas1 Type: universal Location: 2766-3740 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: RAFF01000247.1 Pseudomonas aeruginosa strain HUM-327-D1 repl1 PA2_F12_NODE_28_length_40689_cov_7.33579_ID_55, whole genome shotgun sequence

⇒Summary: seq-len = 40689 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18010-18397 bp Zoom in on locus 1 x7 CRISPR array Location: 18010-18397 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 18010-18397 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18010-18397 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)