CRISPRone

CRISPRone report for GCA_003629285.1_ASM362928v1

♦ Seq 1: RAFE01000564.1 Pseudomonas aeruginosa strain HUM-330 PA2_E12_NODE_10_length_57951_cov_49.3862_ID_19, whole genome shotgun sequence

⇒Summary: seq-len = 57951 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24326-37416 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 24326-24643 bp Gene: cd09641:cas3HD Type: Type-I Location: 34310-36169 bp Gene: unk Type: unknown Location: 36342-36575 bp Gene: unk Type: unknown Location: 36690-37064 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 37111-37416 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RAFE01000139.1 Pseudomonas aeruginosa strain HUM-330 PA2_E12_NODE_291_length_6841_cov_37.085_ID_581, whole genome shotgun sequence

⇒Summary: seq-len = 6841 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6708-6856 bp Zoom in on locus 1 x3 CRISPR array Location: 6708-6856 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 6708-6856 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6708-6856 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RAFE01000262.1 Pseudomonas aeruginosa strain HUM-330 PA2_E12_NODE_124_length_17096_cov_41.63_ID_247, whole genome shotgun sequence

⇒Summary: seq-len = 17096 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 132-520 bp Zoom in on locus 1 x7 CRISPR array Location: 132-520 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 132-520 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 132-520 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RAFE01000330.1 Pseudomonas aeruginosa strain HUM-330 PA2_E12_NODE_198_length_10933_cov_41.6773_ID_395, whole genome shotgun sequence

⇒Summary: seq-len = 10933 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4-10802 bp Zoom in on locus 1 x19 x19 CRISPR array Location: 4-1109 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 4-1109 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09739:cas6f Type: other Location: 1293-1856 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1860-2888 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2899-3882 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3869-5173 bp Gene: COG1203:cas3 Type: Type-I Location: 5231-8461 bp Gene: cd09718:cas1 Type: universal Location: 8458-9432 bp CRISPR array Location: 9694-10802 bp Num of repeats: 19 Spacers: s19-s36 CRISPR array Location: 9694-10802 bp Num of repeats: 19 Spacers: s19-s36 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 4-1109 bp]: array | spacers
           [Locus range 9694-10802 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)