CRISPRone

CRISPRone report for GCA_003629335.1_ASM362933v1

♦ Seq 1: RAFC01000061.1 Pseudomonas aeruginosa strain HUM-265 PA3_B5_NODE_31_length_81076_cov_14.5418_ID_61, whole genome shotgun sequence

⇒Summary: seq-len = 81076 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37342-48262 bp Zoom in on locus 1 x20 x20 CRISPR array Location: 37342-38510 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 37342-38510 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09739:cas6f Type: other Location: 38693-39256 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39260-40288 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40299-41282 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41269-42573 bp Gene: COG1203:cas3 Type: Type-I Location: 42631-45861 bp Gene: cd09718:cas1 Type: universal Location: 45858-46832 bp CRISPR array Location: 47093-48262 bp Num of repeats: 20 Spacers: s20-s38 CRISPR array Location: 47093-48262 bp Num of repeats: 20 Spacers: s20-s38 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37342-38510 bp]: array | spacers
           [Locus range 47093-48262 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RAFC01000069.1 Pseudomonas aeruginosa strain HUM-265 PA3_B5_NODE_1_length_434629_cov_16.4067_ID_1, whole genome shotgun sequence

⇒Summary: seq-len = 434629 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 132226-142582 bp Zoom in on locus 1 x17 x12 CRISPR array Location: 132226-133230 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 132226-133230 bp Num of repeats: 17 Spacers: s1-s16 Gene: pfam09707:cas2 Type: universal Location: 133295-133594 bp Gene: cd09719:cas1 Type: universal Location: 133591-133902 bp Gene: pfam08798:cas6e Type: other Location: 133929-134468 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 134515-135177 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 135179-136321 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 136331-136861 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 136858-138426 bp Gene: cd09641:cas3HD Type: Type-I Location: 138429-141110 bp CRISPR array Location: 141883-142582 bp Num of repeats: 12 Spacers: s17-s27 CRISPR array Location: 141883-142582 bp Num of repeats: 12 Spacers: s17-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 132226-133230 bp]: array | spacers
           [Locus range 141883-142582 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)