CRISPRone

CRISPRone report for GCA_003629345.1_ASM362934v1

♦ Seq 1: RAFB01000031.1 Pseudomonas aeruginosa strain VET-41 PA4_D1_NODE_12_length_174962_cov_39.1878_ID_23, whole genome shotgun sequence

⇒Summary: seq-len = 174962 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 103923-114439 bp Zoom in on locus 1 x8 x12 CRISPR array Location: 103923-104381 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 103923-104381 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09641:cas3HD Type: Type-I Location: 105279-107960 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 107963-109531 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 109528-110058 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 110068-111210 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 111212-111874 bp Gene: pfam08798:cas6e Type: other Location: 111849-112460 bp Gene: cd09719:cas1 Type: universal Location: 112487-113377 bp Gene: pfam09707:cas2 Type: universal Location: 113374-113673 bp CRISPR array Location: 113738-114439 bp Num of repeats: 12 Spacers: s8-s18 CRISPR array Location: 113738-114439 bp Num of repeats: 12 Spacers: s8-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 103923-104381 bp]: array | spacers
           [Locus range 113738-114439 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)