CRISPRone

CRISPRone report for GCA_003629375.1_ASM362937v1

♦ Seq 1: RAFA01000173.1 Pseudomonas aeruginosa strain ENV-204 PA2_F1_NODE_110_length_16680_cov_50.7116_ID_219, whole genome shotgun sequence

⇒Summary: seq-len = 16680 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15717-16524 bp Zoom in on locus 1 x14 CRISPR array Location: 15717-16524 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 15717-16524 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 15717-16524 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RAFA01000273.1 Pseudomonas aeruginosa strain ENV-204 PA2_F1_NODE_41_length_48397_cov_42.5737_ID_81, whole genome shotgun sequence

⇒Summary: seq-len = 48397 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38106-48241 bp Zoom in on locus 1 x15 x12 CRISPR array Location: 38106-38974 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 38106-38974 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 39157-39720 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39724-40752 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40763-41746 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41733-43037 bp Gene: COG1203:cas3 Type: Type-I Location: 43095-46325 bp Gene: cd09718:cas1 Type: universal Location: 46322-47296 bp CRISPR array Location: 47554-48241 bp Num of repeats: 12 Spacers: s15-s25 CRISPR array Location: 47554-48241 bp Num of repeats: 12 Spacers: s15-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38106-38974 bp]: array | spacers
           [Locus range 47554-48241 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)