CRISPRone

CRISPRone report for GCA_003629395.1_ASM362939v1

♦ Seq 1: RAEY01000091.1 Pseudomonas aeruginosa strain HUM-344 NODE_80_length_10253_cov_9.79476_ID_159, whole genome shotgun sequence

⇒Summary: seq-len = 10253 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 57-10226 bp Zoom in on locus 1 x30 Gene: cd09739:cas6f Type: other Location: 57-620 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 624-1652 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 1663-2646 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 2633-3937 bp Gene: COG1203:cas3 Type: Type-I Location: 3995-7225 bp Gene: cd09718:cas1 Type: universal Location: 7222-8196 bp CRISPR array Location: 8457-10226 bp Num of repeats: 30 Spacers: s1-s29 CRISPR array Location: 8457-10226 bp Num of repeats: 30 Spacers: s1-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8457-10226 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RAEY01000010.1 Pseudomonas aeruginosa strain HUM-344 NODE_117_length_1652_cov_6.44333_ID_233, whole genome shotgun sequence

⇒Summary: seq-len = 1652 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 72-760 bp Zoom in on locus 1 x12 CRISPR array Location: 72-760 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 72-760 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 72-760 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RAEY01000052.1 Pseudomonas aeruginosa strain HUM-344 NODE_48_length_39734_cov_14.4535_ID_95, whole genome shotgun sequence

⇒Summary: seq-len = 39734 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37470-39596 bp Zoom in on locus 1 x36 CRISPR array Location: 37470-39596 bp Num of repeats: 36 Spacers: s1-s35 CRISPR array Location: 37470-39596 bp Num of repeats: 36 Spacers: s1-s35 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 37470-39596 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)