CRISPRone

CRISPRone report for GCA_003629755.1_ASM362975v1

♦ Seq 1: RAEI01000022.1 Pseudomonas aeruginosa strain VET-125 PA4_A5_NODE_26_length_76200_cov_49.1676_ID_51, whole genome shotgun sequence

⇒Summary: seq-len = 76200 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 35422-44707 bp Zoom in on locus 1 x23 Gene: cd09641:cas3HD Type: Type-I Location: 35422-37656 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 37706-38380 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 38377-40170 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 40167-41036 bp Gene: pfam01930:cas4 Type: Type-I Location: 41055-41687 bp Gene: cd09721:cas1 Type: universal Location: 41691-42731 bp Gene: cd09725:cas2 Type: universal Location: 42741-43031 bp CRISPR array Location: 43211-44707 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 43211-44707 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 43211-44707 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RAEI01000012.1 Pseudomonas aeruginosa strain VET-125 PA4_A5_NODE_28_length_67911_cov_39.4473_ID_55, whole genome shotgun sequence

⇒Summary: seq-len = 67911 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20685-31545 bp Zoom in on locus 1 x26 x13 CRISPR array Location: 20685-22214 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 20685-22214 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09718:cas1 Type: universal Location: 22475-23449 bp Gene: COG1203:cas3 Type: Type-I Location: 23446-26676 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 26734-28038 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 28025-29008 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 29019-30047 bp Gene: cd09739:cas6f Type: other Location: 30051-30614 bp CRISPR array Location: 30798-31545 bp Num of repeats: 13 Spacers: s26-s37 CRISPR array Location: 30798-31545 bp Num of repeats: 13 Spacers: s26-s37 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 20685-22214 bp]: array | spacers
           [Locus range 30798-31545 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)