CRISPRone

CRISPRone report for GCA_003629815.1_ASM362981v1

♦ Seq 1: RAED01000199.1 Pseudomonas aeruginosa strain VET-48 NODE_34_length_50220_cov_34.3967_ID_67, whole genome shotgun sequence

⇒Summary: seq-len = 50220 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 168-12035 bp Zoom in on locus 1 x23 x27 CRISPR array Location: 168-1517 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 168-1517 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 1777-2751 bp Gene: COG1203:cas3 Type: Type-I Location: 2748-5978 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6389-7690 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7677-8660 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8671-9699 bp Gene: cd09739:cas6f Type: other Location: 9703-10266 bp CRISPR array Location: 10451-12035 bp Num of repeats: 27 Spacers: s23-s48 CRISPR array Location: 10451-12035 bp Num of repeats: 27 Spacers: s23-s48 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 168-1517 bp]: array | spacers
           [Locus range 10451-12035 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RAED01000375.1 Pseudomonas aeruginosa strain VET-48 NODE_212_length_273_cov_0.75_ID_423, whole genome shotgun sequence

⇒Summary: seq-len = 273 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-270 bp Zoom in on locus 1 Gene: pfam09827:cas2 Type: universal Location: 1-270 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RAED01000356.1 Pseudomonas aeruginosa strain VET-48 NODE_30_length_63121_cov_35.338_ID_59, whole genome shotgun sequence

⇒Summary: seq-len = 63121 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 168-797 bp Zoom in on locus 1 x11 CRISPR array Location: 168-797 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 168-797 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 168-797 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)