CRISPRone

CRISPRone report for GCA_003629845.1_ASM362984v1

♦ Seq 1: RAEC01000001.1 Pseudomonas aeruginosa strain HUM-300 PA3_F8_NODE_39_length_50646_cov_47.0788_ID_77, whole genome shotgun sequence

⇒Summary: seq-len = 50646 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 168-12455 bp Zoom in on locus 1 x27 x30 CRISPR array Location: 168-1757 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 168-1757 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09718:cas1 Type: universal Location: 2017-2991 bp Gene: COG1203:cas3 Type: Type-I Location: 2988-6218 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6629-7930 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7917-8900 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8911-9939 bp Gene: cd09739:cas6f Type: other Location: 9943-10506 bp CRISPR array Location: 10691-12455 bp Num of repeats: 30 Spacers: s27-s55 CRISPR array Location: 10691-12455 bp Num of repeats: 30 Spacers: s27-s55 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 168-1757 bp]: array | spacers
           [Locus range 10691-12455 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RAEC01000059.1 Pseudomonas aeruginosa strain HUM-300 PA3_F8_NODE_7_length_208140_cov_50.6711_ID_13, whole genome shotgun sequence

⇒Summary: seq-len = 208140 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 207285-207973 bp Zoom in on locus 1 x12 CRISPR array Location: 207285-207973 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 207285-207973 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 207285-207973 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)