CRISPRone

CRISPRone report for GCA_003629935.1_ASM362993v1

♦ Seq 1: RADY01000030.1 Pseudomonas aeruginosa strain HUM-329 PA3_E11_NODE_42_length_49734_cov_31.3795_ID_83, whole genome shotgun sequence

⇒Summary: seq-len = 49734 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38180-49567 bp Zoom in on locus 1 x26 x16 CRISPR array Location: 38180-39705 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 38180-39705 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09739:cas6f Type: other Location: 39889-40452 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40456-41484 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41495-42478 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42465-43766 bp Gene: COG1203:cas3 Type: Type-I Location: 44177-47407 bp Gene: cd09718:cas1 Type: universal Location: 47404-48378 bp CRISPR array Location: 48639-49567 bp Num of repeats: 16 Spacers: s26-s40 CRISPR array Location: 48639-49567 bp Num of repeats: 16 Spacers: s26-s40 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38180-39705 bp]: array | spacers
           [Locus range 48639-49567 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RADY01000104.1 Pseudomonas aeruginosa strain HUM-329 PA3_E11_NODE_14_length_111817_cov_40.0275_ID_27, whole genome shotgun sequence

⇒Summary: seq-len = 111817 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 111022-111650 bp Zoom in on locus 1 x11 CRISPR array Location: 111022-111650 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 111022-111650 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 111022-111650 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)