CRISPRone

CRISPRone report for GCA_003629955.1_ASM362995v1

♦ Seq 1: RADX01000093.1 Pseudomonas aeruginosa strain HUM-318-D1 PA3_D10_NODE_14_length_123190_cov_31.6767_ID_27, whole genome shotgun sequence

⇒Summary: seq-len = 123190 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 121317-123023 bp Zoom in on locus 1 x29 CRISPR array Location: 121317-123023 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 121317-123023 bp Num of repeats: 29 Spacers: s1-s28 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 121317-123023 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RADX01000061.1 Pseudomonas aeruginosa strain HUM-318-D1 PA3_D10_NODE_47_length_48773_cov_31.3519_ID_93, whole genome shotgun sequence

⇒Summary: seq-len = 48773 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38046-48606 bp Zoom in on locus 1 x13 x21 CRISPR array Location: 38046-38794 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 38046-38794 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09739:cas6f Type: other Location: 38977-39540 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39544-40572 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40583-41566 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41553-42857 bp Gene: COG1203:cas3 Type: Type-I Location: 42915-46145 bp Gene: cd09718:cas1 Type: universal Location: 46142-47116 bp CRISPR array Location: 47377-48606 bp Num of repeats: 21 Spacers: s13-s32 CRISPR array Location: 47377-48606 bp Num of repeats: 21 Spacers: s13-s32 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38046-38794 bp]: array | spacers
           [Locus range 47377-48606 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)