CRISPRone

CRISPRone report for GCA_003629985.1_ASM362998v1

♦ Seq 1: RADV01000132.1 Pseudomonas aeruginosa strain HUM-272 PA3_H5_NODE_40_length_49691_cov_55.3393_ID_79, whole genome shotgun sequence

⇒Summary: seq-len = 49691 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1176-11676 bp Zoom in on locus 1 x20 x13 CRISPR array Location: 1176-2346 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 1176-2346 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09718:cas1 Type: universal Location: 2606-3580 bp Gene: COG1203:cas3 Type: Type-I Location: 3577-6807 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6865-8169 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 8156-9139 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 9150-10178 bp Gene: cd09739:cas6f Type: other Location: 10182-10745 bp CRISPR array Location: 10929-11676 bp Num of repeats: 13 Spacers: s20-s31 CRISPR array Location: 10929-11676 bp Num of repeats: 13 Spacers: s20-s31 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1176-2346 bp]: array | spacers
           [Locus range 10929-11676 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RADV01000065.1 Pseudomonas aeruginosa strain HUM-272 PA3_H5_NODE_51_length_30104_cov_68.2235_ID_101, whole genome shotgun sequence

⇒Summary: seq-len = 30104 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28637-29626 bp Zoom in on locus 1 x17 CRISPR array Location: 28637-29626 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 28637-29626 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 28637-29626 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)