CRISPRone

CRISPRone report for GCA_003629995.1_ASM362999v1

♦ Seq 1: RADU01000062.1 Pseudomonas aeruginosa strain VET-120 PA4_D4_NODE_36_length_47840_cov_36.2531_ID_71, whole genome shotgun sequence

⇒Summary: seq-len = 47840 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 294-10373 bp Zoom in on locus 1 x13 x13 CRISPR array Location: 294-1042 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 294-1042 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09718:cas1 Type: universal Location: 1302-2276 bp Gene: COG1203:cas3 Type: Type-I Location: 2273-5503 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5561-6865 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6852-7835 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7846-8874 bp Gene: cd09739:cas6f Type: other Location: 8878-9441 bp CRISPR array Location: 9625-10373 bp Num of repeats: 13 Spacers: s13-s24 CRISPR array Location: 9625-10373 bp Num of repeats: 13 Spacers: s13-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 294-1042 bp]: array | spacers
           [Locus range 9625-10373 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RADU01000035.1 Pseudomonas aeruginosa strain VET-120 PA4_D4_NODE_12_length_210781_cov_56.4169_ID_23, whole genome shotgun sequence

⇒Summary: seq-len = 210781 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31381-40665 bp Zoom in on locus 1 x23 CRISPR array Location: 31381-32876 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 31381-32876 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09725:cas2 Type: universal Location: 33056-33346 bp Gene: cd09721:cas1 Type: universal Location: 33356-34396 bp Gene: pfam01930:cas4 Type: Type-I Location: 34400-35032 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 35051-35920 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 35917-37710 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 37707-38381 bp Gene: cd09641:cas3HD Type: Type-I Location: 38431-40665 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 31381-32876 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RADU01000020.1 Pseudomonas aeruginosa strain VET-120 PA4_D4_NODE_30_length_63881_cov_45.5417_ID_59, whole genome shotgun sequence

⇒Summary: seq-len = 63881 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62602-63589 bp Zoom in on locus 1 x17 CRISPR array Location: 62602-63589 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 62602-63589 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62602-63589 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)