CRISPRone

CRISPRone report for GCA_003630035.1_ASM363003v1

♦ Seq 1: RADT01000595.1 Pseudomonas aeruginosa strain HUM-401 PA2_A10_NODE_493_length_4125_cov_22.0788_ID_985, whole genome shotgun sequence

⇒Summary: seq-len = 4125 bp; # of CRISPR array = 1; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90-4124 bp Zoom in on locus 1 x23 CRISPR array Location: 90-1438 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 90-1438 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09739:cas6f Type: other Location: 1688-2251 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 2255-3283 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 3294-4124 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 90-1438 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RADT01000431.1 Pseudomonas aeruginosa strain HUM-401 PA2_A10_NODE_849_length_1519_cov_22.3384_ID_1697, whole genome shotgun sequence

⇒Summary: seq-len = 1519 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 223-1210 bp Zoom in on locus 1 x17 CRISPR array Location: 223-1210 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 223-1210 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 223-1210 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RADT01000371.1 Pseudomonas aeruginosa strain HUM-401 PA2_A10_NODE_425_length_4766_cov_19.9311_ID_849, whole genome shotgun sequence

⇒Summary: seq-len = 4766 bp; # of CRISPR array = 1; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-3727 bp Zoom in on locus 1 x15 Gene: cd09673:cas3f Type: Subtype-I-F Location: 2-1627 bp Gene: cd09718:cas1 Type: universal Location: 1624-2598 bp CRISPR array Location: 2859-3727 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 2859-3727 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2859-3727 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RADT01000017.1 Pseudomonas aeruginosa strain HUM-401 PA2_A10_NODE_570_length_3258_cov_20.6218_ID_1139, whole genome shotgun sequence

⇒Summary: seq-len = 3258 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-3257 bp Zoom in on locus 1 Gene: cd09673:cas3f Type: Subtype-I-F Location: 2-1681 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 1739-3043 bp Gene: pfam09614:cas5f Type: Subtype-I-F Location: 3030-3257 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)