CRISPRone

CRISPRone report for GCA_003630095.1_ASM363009v1

♦ Seq 1: RADQ01000745.1 Pseudomonas aeruginosa strain VET-35 PA2_A1_NODE_318_length_4939_cov_30.2065_ID_635, whole genome shotgun sequence

⇒Summary: seq-len = 4939 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 593-4937 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 593-2827 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 2878-3552 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 3549-4937 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RADQ01000355.1 Pseudomonas aeruginosa strain VET-35 PA2_A1_NODE_32_length_42324_cov_22.3422_ID_63, whole genome shotgun sequence

⇒Summary: seq-len = 42324 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 751-1439 bp Zoom in on locus 1 x12 CRISPR array Location: 751-1439 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 751-1439 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 751-1439 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RADQ01000631.1 Pseudomonas aeruginosa strain VET-35 PA2_A1_NODE_756_length_928_cov_3.91843_ID_1511, whole genome shotgun sequence

⇒Summary: seq-len = 928 bp; # of CRISPR array = 0; # of cas gene = 1  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-806 bp Zoom in on locus 1 Gene: pfam09615:cas7f Type: Subtype-I-F Location: 3-806 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RADQ01000677.1 Pseudomonas aeruginosa strain VET-35 PA2_A1_NODE_759_length_970_cov_1.85888_ID_1517, whole genome shotgun sequence

⇒Summary: seq-len = 970 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 710-977 bp Zoom in on locus 1 x5 CRISPR array Location: 710-977 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 710-977 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 710-977 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: RADQ01000077.1 Pseudomonas aeruginosa strain VET-35 PA2_A1_NODE_277_length_6311_cov_28.1012_ID_553, whole genome shotgun sequence

⇒Summary: seq-len = 6311 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-5188 bp Zoom in on locus 1 x26 Gene: pfam09709:cas8c Type: Subtype-I-C Location: 2-442 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 454-1323 bp Gene: pfam01930:cas4 Type: Type-I Location: 1342-1974 bp Gene: cd09721:cas1 Type: universal Location: 1978-3018 bp Gene: cd09725:cas2 Type: universal Location: 3028-3318 bp CRISPR array Location: 3500-5188 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 3500-5188 bp Num of repeats: 26 Spacers: s1-s25 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 3500-5188 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: RADQ01000415.1 Pseudomonas aeruginosa strain VET-35 PA2_A1_NODE_741_length_1041_cov_2.35714_ID_1481, whole genome shotgun sequence

⇒Summary: seq-len = 1041 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-1041 bp Zoom in on locus 1 x18 CRISPR array Location: 0-1041 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 0-1041 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-1041 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)