CRISPRone

CRISPRone report for GCA_003630125.1_ASM363012v1

♦ Seq 1: RADO01000402.1 Pseudomonas aeruginosa strain HUM-374 PA2_F6_NODE_313_length_5562_cov_20.4819_ID_625, whole genome shotgun sequence

⇒Summary: seq-len = 5562 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 532-1580 bp Zoom in on locus 1 x18 CRISPR array Location: 532-1580 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 532-1580 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 532-1580 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RADO01000257.1 Pseudomonas aeruginosa strain HUM-374 PA2_F6_NODE_44_length_33378_cov_14.8725_ID_87, whole genome shotgun sequence

⇒Summary: seq-len = 33378 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 533-10851 bp Zoom in on locus 1 x15 x15 CRISPR array Location: 533-1401 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 533-1401 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09718:cas1 Type: universal Location: 1661-2635 bp Gene: COG1203:cas3 Type: Type-I Location: 2632-5862 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5920-7224 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7211-8194 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8205-9233 bp Gene: cd09739:cas6f Type: other Location: 9237-9800 bp CRISPR array Location: 9984-10851 bp Num of repeats: 15 Spacers: s15-s28 CRISPR array Location: 9984-10851 bp Num of repeats: 15 Spacers: s15-s28 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 533-1401 bp]: array | spacers
           [Locus range 9984-10851 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)