CRISPRone

CRISPRone report for GCA_003630155.1_ASM363015v1

♦ Seq 1: RADN01000054.1 Pseudomonas aeruginosa strain HUM-268 NODE_20_length_125336_cov_18.7659_ID_39, whole genome shotgun sequence

⇒Summary: seq-len = 125336 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124499-125186 bp Zoom in on locus 1 x12 CRISPR array Location: 124499-125186 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 124499-125186 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 124499-125186 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RADN01000097.1 Pseudomonas aeruginosa strain HUM-268 NODE_47_length_47581_cov_17.6709_ID_93, whole genome shotgun sequence

⇒Summary: seq-len = 47581 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37353-47431 bp Zoom in on locus 1 x12 x14 CRISPR array Location: 37353-38041 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 37353-38041 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09739:cas6f Type: other Location: 38224-38787 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38791-39819 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39830-40813 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40800-42104 bp Gene: COG1203:cas3 Type: Type-I Location: 42162-45392 bp Gene: cd09718:cas1 Type: universal Location: 45389-46363 bp CRISPR array Location: 46624-47431 bp Num of repeats: 14 Spacers: s12-s24 CRISPR array Location: 46624-47431 bp Num of repeats: 14 Spacers: s12-s24 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37353-38041 bp]: array | spacers
           [Locus range 46624-47431 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)