CRISPRone

CRISPRone report for GCA_003630225.1_ASM363022v1

♦ Seq 1: RADJ01000295.1 Pseudomonas aeruginosa strain VET-38-D1 PA2_F8_NODE_47_length_30567_cov_20.7904_ID_93, whole genome shotgun sequence

⇒Summary: seq-len = 30567 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16284-18497 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 16284-16691 bp Gene: unk Type: unknown Location: 16731-17417 bp Gene: COG2378:WYL Type: other Location: 17526-18497 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RADJ01000074.1 Pseudomonas aeruginosa strain VET-38-D1 PA2_F8_NODE_494_length_1956_cov_27.231_ID_987, whole genome shotgun sequence

⇒Summary: seq-len = 1956 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 789-1657 bp Zoom in on locus 1 x15 CRISPR array Location: 789-1657 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 789-1657 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 789-1657 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RADJ01000200.1 Pseudomonas aeruginosa strain VET-38-D1 PA2_F8_NODE_16_length_43779_cov_20.4948_ID_31, whole genome shotgun sequence

⇒Summary: seq-len = 43779 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28637-38177 bp Zoom in on locus 1 x3 x14 CRISPR array Location: 28637-28785 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 28637-28785 bp Num of repeats: 3 Spacers: s1-s2 Gene: cd09718:cas1 Type: universal Location: 29045-30019 bp Gene: COG1203:cas3 Type: Type-I Location: 30016-33246 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 33304-34608 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 34595-35578 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 35589-36617 bp Gene: cd09739:cas6f Type: other Location: 36621-37184 bp CRISPR array Location: 37369-38177 bp Num of repeats: 14 Spacers: s3-s15 CRISPR array Location: 37369-38177 bp Num of repeats: 14 Spacers: s3-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 28637-28785 bp]: array | spacers
           [Locus range 37369-38177 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)