CRISPRone

CRISPRone report for GCA_003630285.1_ASM363028v1

♦ Seq 1: RADG01000194.1 Pseudomonas aeruginosa strain VET-78 NODE_57_length_1059_cov_20.1701_ID_113, whole genome shotgun sequence

⇒Summary: seq-len = 1059 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 120-928 bp Zoom in on locus 1 x14 CRISPR array Location: 120-928 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 120-928 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 120-928 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RADG01000050.1 Pseudomonas aeruginosa strain VET-78 NODE_267_length_240_cov_0.883436_ID_533, whole genome shotgun sequence

⇒Summary: seq-len = 240 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97-237 bp Zoom in on locus 1 Gene: pfam09827:cas2 Type: universal Location: 97-237 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RADG01000124.1 Pseudomonas aeruginosa strain VET-78 NODE_33_length_47406_cov_42.4608_ID_65, whole genome shotgun sequence

⇒Summary: seq-len = 47406 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38058-47187 bp Zoom in on locus 1 x14 CRISPR array Location: 38058-38866 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 38058-38866 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09739:cas6f Type: other Location: 39048-39611 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39615-40643 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40654-41637 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41624-42928 bp Gene: COG1203:cas3 Type: Type-I Location: 42986-46216 bp Gene: cd09718:cas1 Type: universal Location: 46213-47187 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38058-38866 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RADG01000199.1 Pseudomonas aeruginosa strain VET-78 NODE_3_length_408944_cov_45.4435_ID_5, whole genome shotgun sequence

⇒Summary: seq-len = 408944 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 407886-408813 bp Zoom in on locus 1 x16 CRISPR array Location: 407886-408813 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 407886-408813 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 407886-408813 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)