CRISPRone

CRISPRone report for GCA_003630365.1_ASM363036v1

♦ Seq 1: RADC01000046.1 Pseudomonas aeruginosa strain VET-32 NODE_21_length_112194_cov_33.692_ID_41, whole genome shotgun sequence

⇒Summary: seq-len = 112194 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110-859 bp Zoom in on locus 1 x13 CRISPR array Location: 110-859 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 110-859 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110-859 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RADC01000039.1 Pseudomonas aeruginosa strain VET-32 NODE_35_length_48196_cov_31.1621_ID_69, whole genome shotgun sequence

⇒Summary: seq-len = 48196 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110-10168 bp Zoom in on locus 1 x10 x10 CRISPR array Location: 110-678 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 110-678 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09718:cas1 Type: universal Location: 929-1903 bp Gene: COG1203:cas3 Type: Type-I Location: 1900-5130 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5541-6842 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6829-7812 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7823-8851 bp Gene: cd09739:cas6f Type: other Location: 8855-9418 bp CRISPR array Location: 9602-10168 bp Num of repeats: 10 Spacers: s10-s18 CRISPR array Location: 9602-10168 bp Num of repeats: 10 Spacers: s10-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 110-678 bp]: array | spacers
           [Locus range 9602-10168 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)