CRISPRone

CRISPRone report for GCA_003630375.1_ASM363037v1

♦ Seq 1: RADB01000264.1 Pseudomonas aeruginosa strain HUM-314-D2 PA2_G9_NODE_60_length_32791_cov_15.9621_ID_119, whole genome shotgun sequence

⇒Summary: seq-len = 32791 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31912-32660 bp Zoom in on locus 1 x13 CRISPR array Location: 31912-32660 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 31912-32660 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 31912-32660 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RADB01000020.1 Pseudomonas aeruginosa strain HUM-314-D2 PA2_G9_NODE_103_length_16078_cov_16.907_ID_205, whole genome shotgun sequence

⇒Summary: seq-len = 16078 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5889-15947 bp Zoom in on locus 1 x10 x10 CRISPR array Location: 5889-6456 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 5889-6456 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09739:cas6f Type: other Location: 6639-7202 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7206-8234 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 8245-9228 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 9215-10516 bp Gene: COG1203:cas3 Type: Type-I Location: 10927-14157 bp Gene: cd09718:cas1 Type: universal Location: 14154-15128 bp CRISPR array Location: 15380-15947 bp Num of repeats: 10 Spacers: s10-s18 CRISPR array Location: 15380-15947 bp Num of repeats: 10 Spacers: s10-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 5889-6456 bp]: array | spacers
           [Locus range 15380-15947 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)