CRISPRone

CRISPRone report for GCA_003630415.1_ASM363041v1

♦ Seq 1: RADA01000015.1 Pseudomonas aeruginosa strain HUM-314-D1 PA3_A10_NODE_40_length_48246_cov_41.7983_ID_79, whole genome shotgun sequence

⇒Summary: seq-len = 48246 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38057-48115 bp Zoom in on locus 1 x10 x10 CRISPR array Location: 38057-38624 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 38057-38624 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09739:cas6f Type: other Location: 38807-39370 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39374-40402 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40413-41396 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41383-42684 bp Gene: COG1203:cas3 Type: Type-I Location: 43095-46325 bp Gene: cd09718:cas1 Type: universal Location: 46322-47296 bp CRISPR array Location: 47548-48115 bp Num of repeats: 10 Spacers: s10-s18 CRISPR array Location: 47548-48115 bp Num of repeats: 10 Spacers: s10-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38057-38624 bp]: array | spacers
           [Locus range 47548-48115 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RADA01000060.1 Pseudomonas aeruginosa strain HUM-314-D1 PA3_A10_NODE_18_length_112205_cov_45.2085_ID_35, whole genome shotgun sequence

⇒Summary: seq-len = 112205 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 111326-112074 bp Zoom in on locus 1 x13 CRISPR array Location: 111326-112074 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 111326-112074 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 111326-112074 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)