CRISPRone

CRISPRone report for GCA_003630485.1_ASM363048v1

♦ Seq 1: RACW01000683.1 Pseudomonas aeruginosa strain VET-30 PA2_H12_NODE_281_length_7963_cov_26.8487_ID_561, whole genome shotgun sequence

⇒Summary: seq-len = 7963 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-7960 bp Zoom in on locus 1 x13 Gene: COG1203:cas3 Type: Type-I Location: 3-1421 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 1424-2992 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 2989-3519 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 3529-4671 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 4673-5335 bp Gene: pfam08798:cas6e Type: other Location: 5310-5921 bp Gene: cd09719:cas1 Type: universal Location: 5948-6838 bp Gene: pfam09707:cas2 Type: universal Location: 6835-7134 bp CRISPR array Location: 7199-7960 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 7199-7960 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7199-7960 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RACW01000577.1 Pseudomonas aeruginosa strain VET-30 PA2_H12_NODE_244_length_8956_cov_25.1431_ID_487, whole genome shotgun sequence

⇒Summary: seq-len = 8956 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8436-8953 bp Zoom in on locus 1 x9 CRISPR array Location: 8436-8953 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 8436-8953 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8436-8953 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RACW01000091.1 Pseudomonas aeruginosa strain VET-30 PA2_H12_NODE_583_length_2002_cov_27.494_ID_1165, whole genome shotgun sequence

⇒Summary: seq-len = 2002 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1564-2019 bp Zoom in on locus 1 x8 CRISPR array Location: 1564-2019 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 1564-2019 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1564-2019 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RACW01000200.1 Pseudomonas aeruginosa strain VET-30 PA2_H12_NODE_16_length_38046_cov_23.8107_ID_31, whole genome shotgun sequence

⇒Summary: seq-len = 38046 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19342-29649 bp Zoom in on locus 1 x15 x9 CRISPR array Location: 19342-20210 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 19342-20210 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09718:cas1 Type: universal Location: 20467-21441 bp Gene: COG1203:cas3 Type: Type-I Location: 21438-24668 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 25079-26380 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 26367-27350 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 27361-28389 bp Gene: cd09739:cas6f Type: other Location: 28393-28956 bp CRISPR array Location: 29140-29649 bp Num of repeats: 9 Spacers: s15-s22 CRISPR array Location: 29140-29649 bp Num of repeats: 9 Spacers: s15-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19342-20210 bp]: array | spacers
           [Locus range 29140-29649 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: RACW01000678.1 Pseudomonas aeruginosa strain VET-30 PA2_H12_NODE_552_length_2427_cov_30.5034_ID_1103, whole genome shotgun sequence

⇒Summary: seq-len = 2427 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2111-2444 bp Zoom in on locus 1 x6 CRISPR array Location: 2111-2444 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 2111-2444 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2111-2444 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)