CRISPRone

CRISPRone report for GCA_003630645.1_ASM363064v1

♦ Seq 1: RACP01000201.1 Pseudomonas aeruginosa strain HUM-8 repl1 PA3_A1_NODE_20_length_75094_cov_39.9929_ID_39, whole genome shotgun sequence

⇒Summary: seq-len = 75094 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 74575-74962 bp Zoom in on locus 1 x7 CRISPR array Location: 74575-74962 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 74575-74962 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 74575-74962 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RACP01000126.1 Pseudomonas aeruginosa strain HUM-8 repl1 PA3_A1_NODE_56_length_39956_cov_38.0045_ID_111, whole genome shotgun sequence

⇒Summary: seq-len = 39956 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 133-10632 bp Zoom in on locus 1 x16 x17 CRISPR array Location: 133-1061 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 133-1061 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09718:cas1 Type: universal Location: 1322-2296 bp Gene: COG1203:cas3 Type: Type-I Location: 2293-5523 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5581-6885 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6872-7855 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7866-8894 bp Gene: cd09739:cas6f Type: other Location: 8898-9461 bp CRISPR array Location: 9644-10632 bp Num of repeats: 17 Spacers: s16-s31 CRISPR array Location: 9644-10632 bp Num of repeats: 17 Spacers: s16-s31 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 133-1061 bp]: array | spacers
           [Locus range 9644-10632 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)