CRISPRone

CRISPRone report for GCA_003630705.1_ASM363070v1

♦ Seq 1: RACL01000233.1 Pseudomonas aeruginosa strain VET-52 PA2_C3_NODE_8_length_67747_cov_18.004_ID_15, whole genome shotgun sequence

⇒Summary: seq-len = 67747 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 746-11318 bp Zoom in on locus 1 x14 x9 CRISPR array Location: 746-1568 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 746-1568 bp Num of repeats: 14 Spacers: s1-s13 Gene: pfam09707:cas2 Type: universal Location: 1633-1932 bp Gene: cd09719:cas1 Type: universal Location: 1929-2819 bp Gene: pfam08798:cas6e Type: other Location: 2846-3385 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 3432-4094 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 4096-5238 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 5248-5778 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 5775-7343 bp Gene: cd09641:cas3HD Type: Type-I Location: 7346-10027 bp CRISPR array Location: 10801-11318 bp Num of repeats: 9 Spacers: s14-s21 CRISPR array Location: 10801-11318 bp Num of repeats: 9 Spacers: s14-s21 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 746-1568 bp]: array | spacers
           [Locus range 10801-11318 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RACL01000199.1 Pseudomonas aeruginosa strain VET-52 PA2_C3_NODE_22_length_48085_cov_22.4412_ID_43, whole genome shotgun sequence

⇒Summary: seq-len = 48085 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4162-15593 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 4162-5832 bp Gene: unk Type: unknown Location: 5648-6238 bp Gene: unk Type: unknown Location: 6353-6514 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 6773-7078 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 15291-15593 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RACL01000442.1 Pseudomonas aeruginosa strain VET-52 PA2_C3_NODE_20_length_50239_cov_20.3663_ID_39, whole genome shotgun sequence

⇒Summary: seq-len = 50239 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33419-46126 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 33419-34333 bp Gene: unk Type: unknown Location: 34797-35297 bp Gene: unk Type: unknown Location: 35297-36199 bp Gene: mkCas0090:PD-DExK Type: other Location: 36238-36963 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 45350-46126 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)