CRISPRone

CRISPRone report for GCA_003631265.1_ASM363126v1

♦ Seq 1: RABJ01000059.1 Pseudomonas aeruginosa strain HUM-241 PA3_E2_NODE_20_length_108671_cov_28.2512_ID_39, whole genome shotgun sequence

⇒Summary: seq-len = 108671 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 83-1012 bp Zoom in on locus 1 x16 CRISPR array Location: 83-1012 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 83-1012 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 83-1012 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RABJ01000100.1 Pseudomonas aeruginosa strain HUM-241 PA3_E2_NODE_45_length_48761_cov_26.8939_ID_89, whole genome shotgun sequence

⇒Summary: seq-len = 48761 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37350-48679 bp Zoom in on locus 1 x23 x18 CRISPR array Location: 37350-38699 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 37350-38699 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09739:cas6f Type: other Location: 38882-39445 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39449-40477 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40488-41471 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41458-42759 bp Gene: COG1203:cas3 Type: Type-I Location: 43170-46400 bp Gene: cd09718:cas1 Type: universal Location: 46397-47371 bp CRISPR array Location: 47632-48679 bp Num of repeats: 18 Spacers: s23-s39 CRISPR array Location: 47632-48679 bp Num of repeats: 18 Spacers: s23-s39 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37350-38699 bp]: array | spacers
           [Locus range 47632-48679 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)