CRISPRone

CRISPRone report for GCA_003631435.1_ASM363143v1

♦ Seq 1: RABB01000008.1 Pseudomonas aeruginosa strain HUM-257 PA3_C4_NODE_26_length_90411_cov_41.5758_ID_51, whole genome shotgun sequence

⇒Summary: seq-len = 90411 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 89660-90107 bp Zoom in on locus 1 x8 CRISPR array Location: 89660-90107 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 89660-90107 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 89660-90107 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RABB01000082.1 Pseudomonas aeruginosa strain HUM-257 PA3_C4_NODE_1_length_400546_cov_38.7275_ID_1, whole genome shotgun sequence

⇒Summary: seq-len = 400546 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 181528-193018 bp Zoom in on locus 1 x16 x22 CRISPR array Location: 181528-182473 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 181528-182473 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09641:cas3HD Type: Type-I Location: 183248-185929 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 185932-187500 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 187497-188027 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 188037-189179 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 189181-189843 bp Gene: pfam08798:cas6e Type: other Location: 189818-190429 bp Gene: cd09719:cas1 Type: universal Location: 190456-191346 bp Gene: pfam09707:cas2 Type: universal Location: 191343-191642 bp CRISPR array Location: 191707-193018 bp Num of repeats: 22 Spacers: s16-s36 CRISPR array Location: 191707-193018 bp Num of repeats: 22 Spacers: s16-s36 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 181528-182473 bp]: array | spacers
           [Locus range 191707-193018 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)