CRISPRone

CRISPRone report for GCA_003631445.1_ASM363144v1

♦ Seq 1: RABA01000038.1 Pseudomonas aeruginosa strain HUM-253 PA3_G3_NODE_39_length_48219_cov_48.7364_ID_77, whole genome shotgun sequence

⇒Summary: seq-len = 48219 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37541-47924 bp Zoom in on locus 1 x11 x20 CRISPR array Location: 37541-38169 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 37541-38169 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09739:cas6f Type: other Location: 38352-38915 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38919-39947 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39958-40941 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40928-42232 bp Gene: COG1203:cas3 Type: Type-I Location: 42290-45520 bp Gene: cd09718:cas1 Type: universal Location: 45517-46491 bp CRISPR array Location: 46756-47924 bp Num of repeats: 20 Spacers: s11-s29 CRISPR array Location: 46756-47924 bp Num of repeats: 20 Spacers: s11-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37541-38169 bp]: array | spacers
           [Locus range 46756-47924 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RABA01000006.1 Pseudomonas aeruginosa strain HUM-253 PA3_G3_NODE_28_length_90135_cov_56.3867_ID_55, whole genome shotgun sequence

⇒Summary: seq-len = 90135 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 71694-82279 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 71694-72563 bp Gene: pfam00078:RT Type: other Location: 77472-78740 bp Gene: unk Type: unknown Location: 78890-79288 bp Gene: unk Type: unknown Location: 79472-79651 bp Gene: cls000170:cas4 Type: Type-I Location: 80735-82279 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RABA01000029.1 Pseudomonas aeruginosa strain HUM-253 PA3_G3_NODE_9_length_212224_cov_56.541_ID_17, whole genome shotgun sequence

⇒Summary: seq-len = 212224 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 295-983 bp Zoom in on locus 1 x12 CRISPR array Location: 295-983 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 295-983 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 295-983 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)